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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … as a stepping stone to studying many genomes simultaneously through multiDAP, which allows researchers to conduct …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … organism as a model system. “People name genes based on similarity to the Chlamy genes,” Merchant … C. zofingiensis on Phytozome …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Biotechnology! Loretta Spencer served as a manyterm mayor of Huntsville, Alabama and is known for her contributions to rapidly growing the economy of Rocket City. Grimwood is also co-director of the … gardens and are exploring improvements to switchgrass through more targeted genome editing techniques. A 2020 …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes contribution of scholarship in the field of microbiology and is awarded … unknown majority of microbes in, on and around the planet–through techniques including single-cell genomics and …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program . And the work is …
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Styling for Safety: PPE, It’s the JGI Way
… Over the last few months, we found an increasing number of colleagues missing elements of the required PPE in the lab. To address this issue, we … to provide our colleagues with a visual representation of JGI PPE requirements. When working in the lab, it is … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of … within Actinobacteria and therefore a cornerstone of ActinoBase,  a public platform built on the knowledge of … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, as well as a member of  its …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the discovery of a … collaborated with the JGI on a proposal using this approach through the Emerging Technologies Opportunity Program …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … provides a foundational data set that is now available through a new  single-cell data viewer that was …
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The Mobilome in the Mire
… researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … generation of flowering vegetation. In return for their services, bees eat plant nectar and pollen. Nectar is an easily … is a kind of movable feast being deconstructed as it goes through the honey bee gut. Early on, monosaccharide sugars …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms organized into multiple interconnected … using HMM profiles of protein domains from the pfam database to test the efficacy of a particular kind of deep …
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