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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a … Science Program proposal. Joseph Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to … these initial efforts: Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early …
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons … to serve on the UEC. For microbial ecologist Gilbert at the University of California (UC) San Diego, being on the UEC is … other scientific organizations. Fungal biologist Stajich from UC Riverside sees the JGI’s open application process …
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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a … When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a novel … Biotechnology Training Program (NIH 5 T32 GM008349) at the University of Wisconsin – Madison. This work was also …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … gene duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of … today. Boasting adaptations in order to protect themselves from environmental stresses, ferns’ secondary metabolites …
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene … joining the JGI, he spent time as a faculty member at the University of Rhode Island, as a Senior Scientist at Warp … of secondary metabolism. … PhD in Chemistry, Johns Hopkins University (2003) MS in Chemistry, Johns Hopkins University …
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Building Sphagnum Genomic Resources
Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … can also act as a protective layer insulating permafrost from the warming regional temperatures. For this reason, the … In The ISME Journal, a team led by researchers from the University of Konstanz and the University of Vienna  …
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key … Reddy TBK, Chen I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … and other microorganisms that live there.  Researchers from Portland State University and the University of Wisconsin-Madison collected …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … 28, 2022, in Cell , a team led by researchers at Tel Aviv University in Israel, the National Center for Biotechnology … data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, …
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JGI Welcomes New UEC Members
… affect users and their access to technical capabilities JGI offers, as well as proposal review procedures and the … three new UEC members. They are: Kathleen Greenham of the University of Minnesota, Matthias Hess of the University of California, Davis and Kristen DeAngelis of …
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Nick Everson
Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics … 2015 Served on the Council of UC Staff Assemblies (CUCSA) from 2015 to 2018, representing Berkeley Lab in this UC-wide …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … O’Malley, a chemical and biological engineer at the University of California Santa Barbara. So plants don’t … it’s possible that fungal communities — or enzymes from fungal communities — could pave the way for many …
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