Results

Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Proposal of Patescibacterium danicum gen. Nov., sp. nov. in the ubiquitous ultrasmall bacterial phylum Patescibacteriota phyl. Nov
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Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen
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The Expanding Universe of Methane Metabolisms in Archaea
Archaea and Eukarya.   One genome, two metabolic pathways “Up to this point, most phylogenomic trees have relied on … “Distribution of predominant high-temperature archaeal and bacterial lineages in Yellowstone National Park,” as well as … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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Alabama A&M Interns Access An Abundance of Knowledge
In 2024, the DOE Joint Genome Institute and Alabama A&M … student Ti’Yanna Watson and graduate student LaMonika Dent worked with JGI mentors Yi Zhai and John Vogel on … just watching and observing your mentor, but also being a support for them and contributing to what they’re trying to …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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CSP Functional Genomics
… genomics research and to help them translate genomic information into biological function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … model for the grasses. In addition to this fundamental work, he established an efficient switchgrass transformation … plants interact with their microbiomes. In addition, his group conducts comparative genomic research to understand the …
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