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Mapping the Earth’s Hidden Fungal Kingdom
… estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in perspective, … Berkeley National Laboratory (Berkeley Lab). “These data can also be used for machine learning and artificial … artificial intelligence to genomics. The comparative datasets that revealed evolutionary patterns are now becoming …
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Boosting Small Molecule Production in Super “Soup”
… ways to accelerate bio-design and identifying the best sets of enzymes that enable synthesis of sustainable … that the cells are no longer growing,” Rasor said. “So they can push more of the carbon that we feed into a product … jump in the rate of product formation.” This was the first time CRISPR-Cas9 had been used to modify a cell’s  genome in …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… structures within cells. This is the largest dataset of its kind ever assembled. The team identified 15 core … the mitochondria into the nuclear genome over evolutionary time. They also discovered more than 6,000 mitochondrial … a two-stage metagenomic detection pipeline: First, they scanned over 26,000 publicly available metagenomes in the …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… entirety due to the COVID-19 pandemic. As a result, mentors set up weekly, or in some cases daily, check-ins with their … the opportunity to learn valuable professional skills like time management and presentation skills.  “This program is … Jacob Espinosa & Li Lei and Virginia Scarlett Jasper Toscani Field & Brian Bushnell Lesly Lopez & Li Lei Lorenzo …
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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