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Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … and oil was also the largest plant project completed by the JGI. It has since been cited more than 5,400 times, … a Genome Insider podcast minisode.)  In 2016, the JGI accepted a proposal from Sebastien Duplessis of the French …
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Who We Are
… communities, and other relevant organisms. We provide access to large-scale datasets and analysis tools for … and metabolomics through its data portals. Supported by the DOE Office of Science's Biological and Environmental … atop the hills above Berkeley, California and operated by the University of California for the U.S. Department of …
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Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation
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Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
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Scaling Up Existing Skill Sets
… 4th year graduate student Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your … in my project was worth it whenever I was able to get a single line of code working and get the desired final output. Being successful in my computational efforts assured me that I had …
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Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to …
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JGI Announces 2025 New Investigator Portfolio
… Cody Spiegel, James Tan, Emma Timmins-Schiffman, Andressa M. Venturini, Valentin Waschulin, Flavia Winck Vischi, … research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part of our  … plant interactions across unique ecosystems, from alpine soils to tropical glaciers.  Proposals are accepted …
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a … 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and … from Chlamydomonas reinhardtii reveals continuous cell and metabolic differentiation. The Plant Cell . 27: 10, …
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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