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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … to conduct comparative analyses across the genomes of multiple species in a single experiment. “Effectively, you … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Natural Prodcast Episode 15: Katherine Duncan
… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … inside them. And this was, I think it must’ve been about 2001, maybe, and so it was before smartphones and before … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to … project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s …
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Uri Neri
… his code. At JGI, he develops tools for viral discovery and analysis, with a particular fondness for RNA viruses – … just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … sorghum genomes. Deep sequencing and genetic linkage analysis improve the genome’s accuracy, and increase its …
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Training the Next Generation of Talent
DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of … start orientation as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… is excited to announce the 18 scientists selected for our 2025 Community Science Program Annual Call. These projects … degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s … “Many of these projects are large in scale and involve multiple collaborators, bringing together diverse expertise …
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PhycoCosm Tutorial
… more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research enabled by the JGI … One review article in the collection, Genomics-enabled analysis of specialized metabolism in bioenergy crops: … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … represented by enough single cell genomes to facilitate an analysis of within and between population heterogeneity by … User Facility, is supported under Contract No. DE-AC02-05CH11231. This work was supported in part by a Natural …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … JGI staff. According to Axel Visel and Zhong Wang, founders of this internship program, this was the largest turnout for … to date.  This summer internship program, which began in 2014, pairs undergraduate and graduate students from UC …
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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … properties, communities and ecosystems.” Building off multiple collaborations, Lab researchers working with the …
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