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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for … Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]. S.C., B.K., and I.V.G. were supported in part …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative …
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10 From JGI on the 2019 Highly Cited Researchers List
… the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 … in the Methodology section as “those that rank in the top 1% by citations for papers published and cited between … Animal Science and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs …
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Natural Prodcast Episode 22: Alison Narayan
… … DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews … (SIMB) Natural Products meeting earlier this year. And today we have our conversation with Professor Alison … has to do with the mechanism. And so these enzymes use O2, and one of those oxygen atoms gets incorporated into our …
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute … has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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An Automated Tool for Assessing Virus Data Quality
… have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …
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Better Genome Editing for Bioenergy
… team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the endonuclease where to cut, but these …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed … Understanding (MoU) signed between UDE and Berkeley Lab in 2022, the delegation from UDE familiarized themselves with … science, energy conversion and water treatment as well as microbial ecology with a focus on metabolism and ecosystem …
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Virus-Microbe Interactions of Mud Island Mangroves
… program , which awards graduate students the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user facilities. Baker had worked with … Rambo’s work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy … Cited Researchers list assembly by Clarivate Analytics. In 2020, she was named a Yellowhammer Woman of Impact.     … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic …
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JGI Announces 2025 New Investigator Portfolio
Pictured from left: [Top] Bill J. Baker, Jeff Barrick, Ian Gilman, Louis Graf, … a list of researchers whose proposals were accepted for 2025. Utilizing the JGI’s resources, these researchers will … and environmental DNA sequencing to explore microbial and plant interactions across unique ecosystems, …
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