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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … of the JGI is to provide the global research community with access to the most advanced integrative genome science …
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends … inside the host’s genome, living quietly and replicating with their host indefinitely. Now, in studying a microbial … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and stimulate a … agencies are emphasizing data integration to support the exploration of new, cross-domain research questions. …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to … of California (UC), Merced graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional development enrichment … Blurring the Line Between Plasmids and Phages …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … of Science User Facility, hosted three undergraduates and seven graduate students from UC Merced through their … had to say about their experiences and what they’ll take with them as they go forward in their careers.   Listed …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … of 100 times the size of what has typically been associated with viruses, while the genomes of large viruses may be only … Program . The team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the …
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Mindfully Moving JGI
… JGI is in the process of shifting its operations from Walnut Creek to the heart of … at maximum) maintained by a workforce that numbered more than 100 at its peak, all the machines were switched off. Over … years ago. For JGIers, the moving process began in 2017 with annual one-day cleanups. During those days, they were …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … The OGG has set out to generate high-quality genome assemblies and annotations for 35 species representing all …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the …
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