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Long-term warming modulates diversity, vertical structuring of microbial communities, and sulfate reduction in coastal Baltic Sea sediments
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Genome-resolved correlation mapping links microbial community structure to metabolic interactions driving methane production from wastewater
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Northern peatland microbial communities exhibit resistance to warming and acquire electron acceptors from soil organic matter
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SIPs with Standards
… Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible to … reusable, and more insightful, for the future of studying microbial communities.   …
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, Biotechnology, University of Tokyo … H, Mouncey NJ. New keys to unlock the treasure trove of microbial natural products. Nat Rev Microbiol. 2021 …
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BBMerge – Accurate paired shotgun read merging via overlap
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Meraculous: De Novo Genome Assembly with Short Paired-End Reads
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MeCorS: Metagenome-enabled error correction of single cell sequencing reads
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Draft genome of the switchgrass head smut pathogen Tilletia maclaganii
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … synthesis and broad diversity of terpenes. Until recently, studies of the TPS gene family were confined to two … to establish the feasibility of genome wide association studies for genetic traits that are desirable from a …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … above all else, determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship … of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted on one or few genomes, but Wint’s …
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