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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting biofuel … sharing.  Recently, researchers have been able to study both sides of this interaction up close, using RNA …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions due to more extreme … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that …
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Accelerating Metagenomics Discoveries with Deep Learning
Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … analysis identified fungal gene families that help determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can …
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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  called geNomad identifies and … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can …
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Three Join the JGI User Executive Committee
… of the University of California, Santa Barbara. They join eight other JGI users already serving on the UEC – go … Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological Society of … biogeochemical cycles in soils and sediments and plant-microbial interactions in crops. He has been a PI or Co-PI …
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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek to the heart of the … Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying … and her own as an early career researcher. “We were able to study hydrocarbon biosynthesis at a scale that would …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … in industry or academia. It was also a great opportunity to study and learn something totally new during my Ph.D. What … Merced in Spring 2019.) Mentor: Ben Cole, Genomics of Plant-Microbial Interactions What effect has your summer …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on Microbial Root … Cross Species Comparison of Plant …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance computing resources, …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … cotton genome ( G. raimondii ) several years ago. Studying the cotton genomes provides breeders with insights … important cattle feed crop,” noted David Stelly, another study co-author at Texas A&M University. “This report …
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