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Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov.
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Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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Tanja Woyke
… Nature Communications, Nature Protocols, Nature Reviews Genetics, ISME J, Nucleic Acids Research, DOE Small Business … et al. 2011. Metagenomic discovery of biomass-degrading genes from cow rumen. Science 331, 463-467. Swan et al. …
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Trent Northen
… Genome Engineering Enables Rapid Activation of Biosynthetic Gene Clusters. Nat Microbiol. 4(12):2498-2510. doi: …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… to customize the crop for additional end products. The genetic diversity within this set of plants, each with a … genome, and these gardens allow researchers to test what genes affect the plant’s adaptability to various … we need to make connections between the plant’s traits and genetic diversity,” said John Lovell, an evolutionary …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their potential to … into larger and coherent pieces called contigs — into genes and even into genomes — from these environmental …
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Mapping the Earth’s Hidden Fungal Kingdom
… massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over the past … have been named. Among those sequenced, roughly half of all genes have completely unknown functions — like a vast … completely unsampled. This creates a bottleneck: Without genetic blueprints from diverse fungi, researchers struggle …
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JGI-UC Merced Interns Share Their 2021 Experiences
… Cataloging Lineage Specific Conserved Genes in Giant Viruses …
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The Expanding Universe of Methane Metabolisms in Archaea
… of the Institut Pasteur in France, the importance of methanogenesis and the presence of methanogens in nearly all types … well as tools for analysis. “There is evidence that methanogenesis is one of the oldest metabolisms, with the first … its impact on climate along earth history.” Marker genes for diverse methane metabolisms Of the 10 MAGs …
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Finding the Fermenters
… at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism … IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. The final dataset – …
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