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Insights into bilaterian evolution from three spiralian genomes
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … conducted through the  Belowground Biogeochemistry Scientific Focus Area (SFA), supported by the Terrestrial … Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming through the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … Advances in sequencing technologies and computational tools have uncovered a diversity of viruses that infect not … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… Ruoxi Zhao and mentor Margot Bezrutczyk Eric Wu and mentor Atif Shahab Edward Lu and mentor Miguel Romero Sean Saki and … And also specifically, it sparked my interest in bioformatics, so that’s what I’m gonna take with me to the … And I’m excited to take that with me, along with other tools that I can use to, um, perform computational biology.  …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research …
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Axel Visel
… Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of …
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JGI on the 2020 Highly Cited Researchers List
… fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … that led to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. Additionally, as part of an international …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … such as individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering …
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