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Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant–Microbe Interactions
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GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems
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Learning to Look
… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 inovirus-like … water, and humans—around the world. By the numbers, the new approach detected inoviruses in 3,609 (6 percent) of the …
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Tour the IGB
… zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of … the science depicted, click here . <span data-mce-type="bookmark" style="display: inline-block; …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American Academy of Microbiology (AAM). She has led JGI’s Microbial Genomics Program since 2009 and heads the … Lab’s 2015 Women @ the Lab honorees. Woyke is the second JGI scientist to receive the van Niel Prize; the 2011-2014 …
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… to energy, are made up heavily of sphagnum mosses.  New research identifies sex chromosomes in the plant and … and filtering water. Peat formed there over thousands of years sequesters more carbon than all other vegetation types … and their role in sphagnum’s survival opens up a new avenue to explore for protecting these ecosystems. …
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Outreach Stories
… Interested in reading more JGI intern and mentor success stories? Read more below. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Program . The comparative framework provided by these high quality reference genome sequences could help researchers … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently published a Nature … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … he and Rokhsar came up with: Until they came up with this new method, Session mentioned that the analysis for …
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Draft genome sequence of Chryseobacterium limigenitum SUR2T (LMG 28734T) isolated from dehydrated sludge
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