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Rex Malmstrom
… and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral … activities of specific microbial groups within complex communities.  The Microscale Applications group also carries … Couradeau, J.S. et al. 2019. Probing the active fraction of soil microbiomes using BONCAT-FACS.  Nature Comm 10(1) 1-10 …
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The Soil Blooms Green
… a microbial community that might be quietly improving the soil. Penn State researchers Mary Ann Bruns and Terry Bell …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi … Pinpointing the processes happening on and in forest soil also better enriches models of global carbon and … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …
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Natural Prodcast Episode 14: Nigel Mouncey
… to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …
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Natural Prodcast Episode 9: Roger Linington
Apple Podcasts or wherever you’re getting this and tell me why you’re listening. DAN: But, now, here’s Natural Prodcast … by the National Institutes of Health. DAN:  All right, why don’t you tell us a little bit about that. ROGER:  Yeah, … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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From Competition to Cooperation
… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … validate how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are three types of fungal … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing …
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Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing
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JGI Accepts 17 Proposals for Community Science Program
University and colleagues are interested in the microbial communities that live on Alaska’s glacially dominated Copper … interact with their environment, potentially accelerating soil carbon loss. Orange ribbons mark the heated plots and … collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently burned …
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IMG Group
… fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Learning to Look
… and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … inoviruses are in every major microbial habitat—including soil, water, and humans—around the world. By the numbers, …
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Decrypting bacterial polyphenol metabolism in an anoxic wetland soil
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