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Frequently Asked Questions: Proposal Submission
… The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal. … Benefits sharing in the US National Parks USDA Animal and Plant Health Inspection Service permits US Fish and Wildlife …
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Mapping the Earth’s Hidden Fungal Kingdom
… estimated 2–6 million species — dwarfing the diversity of plants. To put this evolutionary timescale in perspective, … about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … yeast genomes, machine learning identified specific genes associated with metabolic flexibility, distinguishing …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … the forest floor: the leaf litter on top of the soil, the roots of the trees, the rhizosphere soil (soil under direct …
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JGI@25: Using Team Science to Build Communities Around Data
… Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the foundation for an … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… We love to work with single organisms and mixed cultures of fungi, algae, protists, bacteria, archaea, viruses, plants, including microbial communities and plant-microbe interactions. However, you are encouraged to … Benefits sharing in the US National Parks USDA Animal and Plant Health Inspection Service permits US Fish and Wildlife …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… Auer discuss their work on communities of forest floor fungi. Allison Joy looks into seagrass meadows' carbon … research on the symbiotic relationship between mycorrhizal fungi and plant roots.  …
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Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
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How Filamentous Fungi Sense Food
… and decide on the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and … The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading enzymes (PCWDEs) that allow them …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex … compounds may also be involved in how the fungi metabolize plant biomass, which could inform how scientists can more … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … the ability to adapt to different environments were deeply rooted in the common ancestor of algae and land plants. The …
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Natural Prodcast Episode 20: Brian Bachmann
… And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, … And that’s what I really wanted to do. And that’s why I came back to academia. And I set that up. And we …
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User Advisory Committees
… The Plant Program Advisory Committee is chartered to offer … Plant Program User Advisory Committee …
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