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Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262T)
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work may … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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A More Intuitive Phytozome Interface
… Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase … legacy data resources and hardware, while also developing a modern and maintainable version of Phytozome, is not prudent … preset for the gene in question, so you can download sequences, annotations, and gene structures. These genomes’ …
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Methane Makers in Yosemite’s Lakes
… They’re a great way to see how climate change affects freshwater ecosystems, and how those ecosystems work. …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the JGI surpassed three Petabases of data sequenced — that’s three-quadrillion base pairs of DNA … for over 20 years in order to better understand how the freshwater ecosystem works. When she set out to analyze 500 …
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Mapping the Earth’s Hidden Fungal Kingdom
… about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … for prediction of fungal lifestyles based on genome sequences.” The Fungal Knowledge Gap The fungal kingdom … enough that thousands can be sequenced and compared using modern technologies. The JGI recognized this opportunity …
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JGIota: Looking Back at Sequencing for Soybeans
… So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s …
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Complete Genome Sequence of Desulfurococcus fermentans, a Hyperthermophilic Cellulolytic Crenarchaeon Isolated from a Freshwater Hot Spring in Kamchatka, Russia
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Project Management Office
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The Genome Sequence of Methanohalophilus mahii SLPT Reveals Differences in the Energy Metabolism among Members of the Methanosarcinaceae Inhabiting Freshwater and Saline Environments
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the …
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Maureen Berg
… that viruses play in their ecosystems, particularly in freshwater ecosystems. …
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