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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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Experimental Evolution of Extreme Resistance to Ionizing Radiation in Escherichia coli after 50 Cycles of Selection.
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Lessons from Two Design–Build–Test–Learn Cycles of Dodecanol Production in Escherichia coli Aided by Machine Learning
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CRAGE-mediated insertion of fluorescent chromosomal markers for accurate and scalable measurement of co-culture dynamics in Escherichia coli
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … solve energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references …
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Laboratory Evolution and Reverse Engineering of Clostridium thermocellum for Growth on Glucose and Fructose
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … approach, we employ various omics technologies, strain engineering and experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this …
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Partnerships Development Team
… works closely with the Berkeley Lab Intellectual Property Office to facilitate these new interactions.  The PDT … high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … called chassis-independent recombinase-assisted genome engineering (CRAGE), which offers single-step genomic …
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The Escherichia coli MFS-type transporter genes yhjE, ydiM, and yfcJ are required to produce an active bo3 quinol oxidase
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Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 …     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … and computational analysis, JGI scientists are able to link metabolic activity with gene expression, providing deeper …
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