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Micro-Scale Applications Group
… Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …
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Natural Prodcast Episode 17: Cassandra Quave
… culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … methicillin-resistant Staphylococcus aureus . Can you share why finding treatments for these microbes is so important? … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in …
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Biodesign
… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … platform enables users to validate hypotheses generated from mining genomic data by designing and assembling … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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JGI@25: From Life at the Extremes to Editing Genomes
… Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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Secondary Metabolites Program
… interactions with their environments and with each other, from defending against predators to aiding in symbiotic … broader goal of enhancing biotechnological applications, from biofuel production to improving the resilience and … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, …
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Data Policy
… embargo starting at construct or strain delivery.  Detailed sequence information and constructs are made publicly … Proposals accepted before FY22 are transitioning away from producing use-restricted data. JGI proposals typically … project level to expedite the change in data policy. Data from projects for which JGI has not yet received samples as …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for … the JGI User Agreement will be an authorized representative from your institution (usually a legal counsel … Guidance on international shipments can be found in the Sequencing Sample …
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Metabolomics Program
… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …
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Project Management Office
… Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy Hammon Workflow Planning Manager …
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Genome Sequences of Actinobacteria from Extreme Environments in Colombia
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Natural Prodcast Episode 14: Nigel Mouncey
… lot going on, so I took a little break, but I’m hoping that from here I can get back to a regular schedule. I’m going to … I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein identified from … No. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing Center ( …
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