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Secondary Metabolites Program
… interactions with their environments and with each other, from defending against predators to aiding in symbiotic … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … of horizontal gene transfer. … The SMC provides complete sequence and annotation data for secondary metabolite …
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JGI@25: From Life at the Extremes to Editing Genomes
Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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Metabolomics Program
… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …
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Project Management Office
Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy Hammon Workflow Planning Manager …
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Synthetic Biology Lab
We focus our efforts on integrating database mining and sequence design with scaling the production of large, … on developing methods for converting digital information from sequence databases into biotechnological or environmental …
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Data Policy
… embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly … Proposals accepted before FY22 are transitioning away from producing use-restricted data. JGI proposals typically … project level to expedite the change in data policy. Data from projects for which JGI has not yet received samples as …
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Frequently Asked Questions: Project Management
… by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) … I request a culture/slant/DNA of an organism that has been sequenced at the JGI? … How do I check the current status of …
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Scientific Advisory Committee
… (CSP). A crucial job of the committee is to take the input from the CSP Proposal Study Panel on prioritization of CSP projects and, with concurrence from the DOE Office of Biological and Environmental Research (BER) program, set the final sequence allocation for this program. …
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Genome Sequences of Actinobacteria from Extreme Environments in Colombia
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Fungal & Algal Program
Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international …
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Natural Prodcast Episode 14: Nigel Mouncey
… lot going on, so I took a little break, but I’m hoping that from here I can get back to a regular schedule. I’m going to … I did my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for … to some people more about down the road. Email Nigel! He’ll sequence whatever you want!  [LAUGHTER]  NIGEL MOUNCEY: We …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … their yields and improving their abilities to adapt to extreme environments such as poor soils and drought. The … genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy …
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