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David Goodstein
… and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building … to the Human Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research … Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … The genes are pretty much 100% identical. We don't know why one is expressed over the other. As far as whether we're … are capable of making those strange ring systems. JACKIE: Why? Is it just because of ring strain or is it-- I guess, …
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Protocol for condition-dependent metabolite yield prediction using the TRIMER pipeline
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Oleaginous Yeast Biology Elucidated With Comparative Transcriptomics
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever … group to operate a similar single-cell genomics pipeline that provides JGI users access to the genomes of … ( magna cum laude ) … Serrano et al. 2024.  Spatial co-transcriptomics reveals discrete stages of the arbuscular …
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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … he established an efficient switchgrass transformation pipeline and, in collaboration with industrial partners, … of transgenic switchgrass lines in an effort to create improved varieties for biomass production. He did his …
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The JGI Data Portal: Improving User Experience
… agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … Data Portal is currently only accessible via Phytozome, the improvements it encompasses are more broadly applicable to … download processes from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
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