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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … step for many projects at the JGI. The quality of the starting material is one of the greatest predictors …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … Biotechnology . Known as the GEM (Genomes from Earth’s Microbiomes) catalog, this work results from a collaboration … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Nikos Kyrpides
… 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, University of Crete, Greece …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … more about some of the background and sort of the reasons why we want to do this. And also to provide a little more …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … Elucidating Sphagnum microbiome genetic interactions for improved growth at … to soil carbon storage during simulated range shifts of plant-fungal symbionts …
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User Support
… The JGI Project Management Office carries out a number of activities to facilitate … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this time, your Project Manager will: …
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JGI-TMF Critical Minerals and Materials Call
… for researchers to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … Data Policy . In cases where the JGI provides customized analysis, the JGI also participates in publication of …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our …
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … DAN UDWARY: That’s weird. I hadn’t heard that before. Why is that? Why would that be the case? ALISON NARAYAN: …
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A data analysis and coordination center for the human microbiome project
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, … and other data produced at scales amenable to statistical analysis. To meet these needs, the JGI deploys …
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