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Exploring Phages at JGI
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Single Cell Research Group
… Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Congratulations to the 2023 Highly Cited Researchers from the JGI recognized for … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … the discovery of anaerobic fungi’s ability to break down lignin , the hardiest of plant components and a key barrier …
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Natural Prodcast Episode 3: The Primer, Part 3
… and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s happened so far in the … me to check her stat and she was absolutely correct. Since 2010 there have been eight new antibiotics added to the … from your cultures, but then you’re going to find another 20 or 30 secondary metabolism pathways that you didn’t even …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences … to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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Tracing the Evolution of Shiitake Mushrooms
… from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 … — cellulose, hemicellulose, and the toughest molecule, lignin. Understanding Lentinula genomes and their evolution … of Lentinula species.The Lentinula genus diverged roughly 28 million years ago, when the largest mammal …
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How Filamentous Fungi Sense Food
… this fungus breaks down plant cell wall materials including lignin, cellulose and hemicellulose. The Impact N. crassa is … Laboratory under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program …
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The fungus that made itself at home
… down only the cellulose and hemicellulose, leaving the lignin behind. The brown rot Serpula lacrymans is typically … to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of Oslo … of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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A Shrubbier Version of Rubber
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… help drive discoveries that will render new economic advantages for farmers concerned with improving sustainable soil …
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