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The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … of Energy Joint Genome Institute (https://ror.org/04xm1d337), and the National Energy Research Scientific Computing …

… to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT). Q:  Do you offer scholarships and/or …

… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh …

Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers … areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking to download all the …

… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the …

… and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice … BGCs in  IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to this JGI Natural Prodcast episode on genome …

… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new … Program awarded under UC-DOE Prime Contract DE-AC02-05CH11231. The work conducted by the U.S. Department of Energy …

… the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find earlier in the … on microbiomes they only talk about the bacteria. My god! 30% of our gut microbes are fungi. It’s really frustrating … And because the average fungal genome, I don’t know, is 30 megabases? Basidiomyetes might get to 50. Some of them go …

… of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …

… on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … enediynes to the market in 2001 with a drug called Mylotag. Wyeth was later acquired by Pfizer in 2009. So, a … genome, the genome predicts they often can produce around 30 – more than 30 compounds. So, this was a complete …