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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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2025 NeLLi Symposium
… and postdocs (including LBNL students and postdocs): $250      Hosted by the DOE Joint Genome Institute, the … Nevada, Las Vegas, and the Desert Research Institute, the 2025 NeLLi Symposium delves into the most recent expansions of … Atomic Testing Museum at the Desert Research Institute. Metagenomic and single-cell sequence data have provided a …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the …
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Natural Prodcast Episode 22: Alison Narayan
… nature does this with such elegance And also to take advantage of the biological properties that these molecules have … has to do with the mechanism. And so these enzymes use O2, and one of those oxygen atoms gets incorporated into our … to test that hypothesis through site-directed mutagenesis, we would end up with dead enzymes. So often, when …
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You Can Move, But You Can’t Hide
… The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … Science User Facilities operated under Contract No. DE-AC02-05CH11231. This work also received support from the …
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Natural Prodcast Episode 16: Marcy Balunas
… say a clutch is probably the size of a golf ball and has 25 to 50 eggs. I’m guessing here.  DAN: Sure, sure.  MARCY: … That is one of the really big frontiers for the next stage of natural product drug discovery I think. Or even … computational skills among biologists JGI CSP Proposal: Metagenomic mining of natural product diversity and …
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The JGI Data Portal: Improving User Experience
… Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers … areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking to download all the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … store their genetic information in RNA without a DNA stage. “I would argue RNA viruses globally are even less … from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … of the library. 6mA and 4mC (~50x depth), 5mC (~250x depth required). Methylation detection currently only … to long-read metagenome assemblies by JGI and uploaded to IMG? A:  Depending on the project setup, we can include as …
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Exploring Phages at JGI
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Uncovering Novel Genomes from Earth’s Microbiomes
… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice …
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Single Cell Research Group
… Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …
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