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The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … Science User Facilities operated under Contract No. DE-AC02-05CH11231. This work also received support from the …

On February 17, 2021, JGI and the Environmental Molecular Sciences … to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as …

Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …

Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers … areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of … Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking to download all the …

… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the …

… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice …

… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new …

… we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find … conference, which took place a few weeks ago, in January of 2020. So, you might hear us referencing a conference, and …

… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …

… on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … right? BEN: Yeah, yeah. Well, we are at [10 to the] minus 12 [Molar concentration]- is sufficient to kill cells. So … enediynes to the market in 2001 with a drug called Mylotag. Wyeth was later acquired by Pfizer in 2009. So, a …