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CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure
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Natural Prodcast Episode 7: Ben Shen
… on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … enediynes to the market in 2001 with a drug called Mylotag. Wyeth was later acquired by Pfizer in 2009. So, a … have to think about a scientific discovery, the two major stages. So one is called “discovery”, one is called …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the … the strategy of lysogeny. The ability of the virus to tag along with the host has earned this strategy a riff, …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… plant biomass. Here, cud-chewers like goats, sheep and cows share an important talent. In their herbivorous lives, … processing. “So if you peer inside a poop sample, or a rumen sample, you’re going to find beautiful diversity.” … genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …
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Functional plasticity of HCO3 – uptake and CO2 fixation in Cupriavidus necator H16
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How to Target a Microbial Needle within a Community Haystack
… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … their environments. Summary The traditional shotgun metagenomics approach to learning more about environmental …
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Plant Program
… accessions) and protocols (transformation, crossing, mutagenesis) are available to the community.   … EcoFABs link … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in KBase …
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Sequencing Submission Requirements for DNA Synthesis
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Natural Prodcast Episode 4: Nancy Keller
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Natural Prodcast Episode 12: Nadine Ziemert
… that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot of … of secondary metabolite pathways as viewed through metagenome studies, and what more JGI and others can do to …
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Tapping the treasure trove of atypical phages
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Soil exchange rates of COS and CO18O differ with the diversity of microbial communities and their carbonic anhydrase enzymes
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