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Single Cell Research Group
Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …
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Exploring Phages at JGI
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the … User Facility, is supported under Contract No. DE-AC02-05CH11231. JRS is supported by the NASA Astrobiology …
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Back to the Future! A Sorghum Story
… specifically to turn their biomass into sustainable biofuel and bioproducts. John Mullet, a biologist at Texas …
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Exploring the Diversity of the American Prairie’s Switchgrass
… ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, …
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Natural Prodcast Episode 3: The Primer, Part 3
… episode 3 of the Primer! — DAN: So, you know, in the in the 50s 60s 70s, most of the exploration of this is done by …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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Dan Rokhsar
… genomics is targeted towards the development of improved biofuel feedstocks and understanding and ultimately …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … rotation, but soybean ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These … of projects that point to the potential of seed oils as biofuel. After analyzing the original sequence, Gary Stacey …
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An Integrated Dataset to Understand Ecosystem Interaction
… their genetic diversity. They hold economic value as both biofuel feedstock and their role in carbon sequestration. … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of … for adaptation within the trees. The data set generated is 25 terabytes in size. Resources for genomic sequencing, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of … gene expression within circular capture areas roughly 55-microns in diameter — about the width of a human hair. At … view of both plant and fungal activity at different stages of this symbiosis. Within that activity, Serrano, Cole …
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