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User Programs
… synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS … minerals and materials. Details Proposals must be preceded by Letters of Intent and must use a variety of capabilities …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have …
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Industry Engagement Program
… than 2,500 users that predominately come from the public sector: academic and government institutions — with … that had remained largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in … data to support AI applications. In an effort to lead AI-driven genomic innovation to advance biotechnology, the JGI …
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Natural Prodcast Episode 17: Cassandra Quave
… and Sciences. She’s an ethnobotanist and the herbarium curator there, with a broad range of experimental work on plants … in stores and online, and there’s an audio version, read by Cassandra, and the paperback version will be available in … early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy listening! …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … people all over the word who have a common interest, united by natural products, DAN: You guys have put together a … more nimble and they’re more innovative and so curiosity driven. So the product is not – well, it is our ultimate …
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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new ecological habitat. The Science By comparing genetic information from similar organisms, … This research was supported by the University of Oslo and Norwegian Research Council, … UK Natural Environment Research Council. The work conducted by the U.S. Department of Energy Joint Genome Institute is …
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Ancient Algae Reveal Secrets of Plant Evolution
… plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of … The Impact A deeper understanding of how plants adapted to terrestrial life paves the way for innovations in …
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Computationally Classifying Fungal Lifestyles
… genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … could provide more insights into how these fungi have adapted to stress and host specificity, particularly … species, and also provides more information about speciation events. …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … term you prefer. In this episode we’re going to finish up by talking about the modern, post-golden age history of … current age of secondary metabolism is that it’s very DNA-driven. Sequence-driven. Yeah, because we can find more …
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Plant Microbial Interactions Group
… pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome … Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE … management for the reference eukaryotic genomes produced by the DOE Joint Genome Institute and the collaborative …
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Diversity and heritability of the maize rhizosphere microbiome under field conditions
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