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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… and viruses vastly outnumber the microbes. Advances in sequencing technologies and computational tools have … in collecting and submitting their microbiome samples for sequencing at the JGI cannot be overstated. Their … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Secondary Metabolites Program
… We have developed Regulon Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma … We are also utilizing DNA-Affinity Purification (DAP) sequencing to express hundreds of transcription factors and …
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Development and characterization of a thermophilic, lignin degrading microbiota
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Environmental Genomics Group
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — …
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High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6T), a diphenol degrader with genes involved in the catechol pathway
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Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris
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Functional genomics gives new insights into the ectomycorrhizal degradation of chitin
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High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea
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Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus
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Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome‐resolved metagenomics
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Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli
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