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Natural Prodcast Episode 15: Katherine Duncan
… got Kate here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared … was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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FICUS Overview
… A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be … provides customized analysis, the JGI also participates in publication of results. … The ranked proposal list, along with a recommendation from management at JGI and the other participating …
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Plant Program
… agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … Plant Flagship Genomes are selected through discussion with the JGI Plant …
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Natural Prodcast Episode 16: Marcy Balunas
… And so these tubules are like tiny monocultures but the whole of the organ which is about the size of your pinky … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we …
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Genome Insider
… The Genome Insider podcast brings listeners into the science … — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, … analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Natural Prodcast Episode 9: Roger Linington
… Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, Canada. … products field as it relates to structure elucidation and genome mining, and how we might start to better connect … in how we can build tools which will let us see the whole landscape of natural products. So you know, for …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the minimum is 100 kb, and for … with grants funded by DOE-BER requiring support from the JGI may  submit proposals here . Investigators …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … external advisory body, the JAC includes representatives from all specialized JGI advisory and executive committees. … The DNA Synthesis Science Advisory Committee is chartered to …
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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
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Secondary Metabolites Program
… interactions with their environments and with each other, from defending against predators to aiding in symbiotic … broader goal of enhancing biotechnological applications, from biofuel production to improving the resilience and … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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Reference-free structural variant detection in microbiomes via long-read co-assembly graphs.
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