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JGI@25: Using Team Science to Build Communities Around Data
… for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … of Georgia, along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Natural Prodcast Episode 19: Bill Fenical
… DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … from the ocean. We didn’t know whether to study bacteria, fungi, archaea, the whole range of microbial life. So, we …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … been shared for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise … the organization in terms of the sequencing and the metabolomics, synthetic biology. But we need people from outside of …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … penicillin from the fungal species – probably told us that fungi could be very productive sources for, say, biological …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of genes … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …
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Multi‐Omics Analyses Reveal Divergent Molecular Mechanisms Underlying Plant Biomass Conversion by Five Fungi
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Lignin deconstruction by anaerobic fungi
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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … which is also focused on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel … collaboratively developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A collaborative … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex … The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … were making. So, Trent Northen , head of the JGI Metabolomics Technology Group, with scientists Ben Bowen and …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe they … natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your …
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