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Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
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User Support
The JGI Project Management Office carries out a number of activities to … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science … a total of 44,652 complete or near-complete viral genomes across both datasets, separating these from the vast … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …
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Beneath the surface: Unsolved questions in soil virus ecology
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of … we are today, recording today. BRIAN BACHMANN: Yeah, in the year 2000. And I was trying to figure out what to do with … goal of this research then? Is it to understand that ecology? Or are you still doing drug discovery BRIAN …
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Natural Prodcast Episode 22: Alison Narayan
Biotechnology (SIMB) Natural Products meeting earlier this year. And today we have our conversation with Professor … about the field of biocatalysis and what needs to be done across science to to get a point where we can predict an … PNAS.  2023,  120, e2218248120. doi : 10.1073/pnas.2218248120 …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book … “But same as DNA viruses, RNA viruses infect microbes all across the world and lead to cell death and/or profound …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Community structure explains antibiotic resistance gene dynamics over a temperature gradient in soil
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from … to tree roots and soil. These fungi help shape a forest’s ecology. They store carbon and cycle key nutrients like … this way was challenging, according to Martin. “Twelve years ago, when we mapped the first sequenced RNA from the …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic … under Contract Numbers DE-AC02–05CH11231 (JGI) and DE-AC05–76RL01830 (EMSL). This work was funded by a Gordon and Betty …
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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
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