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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … to revive the art of hands-on microbiology and experimental validation.  Microbes run the world, playing key roles in …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support plant and other efforts. The JGI …
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User Executive Committee Charter
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices … users and their science including technical capabilities offered, proposal review procedures, and the annual user … has been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Terms …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … genes — 14 encoding energy-production proteins plus one ribosomal protein gene — were present in every genome … — supporting the notion that the boundary between these two genomes is not fixed, but continues to shift through …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … solve energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references … the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics Building was …
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY …     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … genomes of uncultured  microbes , scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell … U.S. Department of Energy Joint Genome Institute (https:// …
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … of single-cell genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) …
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An Improved Method of RNA Isolation from Loblolly Pine (P. taeda L.) and Other Conifer Species
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … help with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching the user’s … Please review our FAQ in advance of contacting the PMO office.  …
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Comparative genomics of two ‘Candidatus Accumulibacter’ clades performing biological phosphorus removal
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