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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This … work as exploring and exploiting biocatalysts – that is, using enzymes to do chemical reactions. Obviously, in my … Episode Transcript … of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction”,  PNAS.  2023,  …
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Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Whole genome assembly from 454 sequencing output via modified DNA graph concept
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted … . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … request falls below these thresholds, you will need to utilize a core facility instead. Proposals may not exceed …
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Webinar: MycoCosm Tutorial
… While are still working on finalizing the tree and related publication the tree is still in development and not … of the portal. 14.  Q: Has there been any interest in using JBrowse / JB2  for genomic views ( e.g.,: … different strain assembly (same organism) without having to blast the sequence in the other strain portal? Like for …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … Episode Transcript … of genome mining, the science of examining DNA sequence to try and predict the structures of secondary metabolites …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in … also tackles challenges posed by environmental change, focusing on plant resilience — highlighting the vulnerabilities …
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Game On: High School Students Drive Everglades Metagenomics Study
… Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in … In the summer of 2018, Jonathan Benskin was preparing to teach a second year A-Level Advanced International … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI … from the mitochondria into the nuclear genome over evolutionary time. They also discovered more than 6,000 … team then extended their analysis beyond the reference set, using two additional approaches. To search environmental …
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Meeting Code of Conduct
… All participants and staff of JGI events are required to adhere to the following Code of Conduct. Event organizers will …
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Webinars on Offerings & Capabilities
… Below are a list of webinars that can help you through the submission process by … here . You can find additional webinars covering how to use our data portals here.  …
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