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FICUS-NERSC/KBASE
Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve … of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of … a postdoc and went to industry to see what they had, what data they had. DAN UDWARY: And they had a lot of data for … we built this as a platform that allows us for– it’s geared toward mammalian systems. But it allows us to assay on a …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint … to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis …
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Offerings & Capabilities
The central mission of the JGI’s Genomic Technologies department is   … capabilities to help advance their science by generating data in three overarching categories: Sequencing, Synthesis … and further advancing sequence applications, single cell genomics, DNA synthesis, and metabolomics.   … Deputy …
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Toward More Efficient Artificial Photosynthesis
Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation … cycle. The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials … resource for making high-value bioproducts. As a step toward the long-term goal, researchers are now able to …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … on Phytozome  … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome … works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a … soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in … . … Phakopsora pachyrhizi on MycoCosm Data Portal …
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