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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, …
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions
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Microbial Program
… on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the bleached, … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological mechanisms …
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Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  … these fungi play a role in the global  carbon cycle . As decayers, Lentinula fungi access carbon previously locked …
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Inorganic nitrogen availability alters Eucalyptus grandis receptivity to the ectomycorrhizal fungus Pisolithus albus but not symbiotic nitrogen transfer
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Proteomics for Validation of Automated Gene Model Predictions
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Industry Engagement Program
… that had remained largely unknown and underutilized by industry. When Director Nigel Mouncey joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … portfolio of user companies. Now the Department of Energy is uniting National Labs and industry, including User …
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Frequently Asked Questions: Project Management
… Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics projects: Christa Pennacchio   … You can visit the Products & Offerings section of our website for … The majority of JGI projects come from the user community. Find out about …
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