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Fungal & Algal Program
… program seeks to expand our understanding of algal biology using genomics and multi-omics by working with research labs … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of … sampling of fungi, laboratory analysis and genomics data exploration. … The Mycocosm web portal provides data …
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Accelerating Metagenomics Discoveries with Deep Learning
… (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid …
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Disclaimer
… system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by …
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Structural Determinants Underlying Photoprotection in the Photoactive Orange Carotenoid Protein of Cyanobacteria
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Prokaryote Program User Advisory Committee
… management and strategic objectives of the microbial and metagenome programs and report back to them. The Committee …
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Metabolomics
… profiles from diverse biological and environmental samples using advanced liquid chromatography mass spectrometry … soil, lake).  A wide range of metabolites are identified using LC-MS/MS methods optimized for specific types of …
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Natural Prodcast Episode 17: Cassandra Quave
… there are now international regulations that provide a structure for ensuring that the countries that are the … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … screen to look at the interaction between SARS-coV-2 spike protein and the ACE2 receptor, so we’re looking at viral …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … host organism. With the virus-host boundary clearly defined using functional annotation methods, it was possible to …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Natural Prodcast Episode 19: Bill Fenical
… everybody else started looking at things and doing chemical structures, learning a little bit about things. And that was … molecules that bound inside the cells to tubulin, these proteins that allow the cells to divide. We found all sorts … we have to devise our own culture media. So we started using a whole bunch of polysaccharides. We cultured things …
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Natural Prodcast Episode 20: Brian Bachmann
… screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and enzyme systems to … to offer because they’re unique environments. These are structures that are millions of years old. This is — rooms … or you could look at metabolism markers like phosphoprotein S6. So if there is a perturbagen present– DAN …
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JGI@25: Using Team Science to Build Communities Around Data
Spatafora of Oregon State University led the effort to sequence 1000 fungal genomes to create two reference genomes … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … on Phytozome  … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …
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