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Synthesis
… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel … users to validate hypotheses generated from mining genomic data by designing and assembling physical DNA constructs …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… been sequenced with sufficient resolution to analyze their structure. Scientists found both a gene likely important for sex determination and a shared genetic architecture with Y … the shrub willows through the  Community Science Program , using long-read sequencing to assemble the repetitive areas …
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Partnerships: Myco-Ed
… train students and professors in laboratory techniques and data analyses compile original data for improving fungal genomic resources empower students … fungi, sterilize tissue, isolate genes and more. The metadata then goes into iNaturalist. Myco-Ed has:  ~50 lineages …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a … drift and diversification processes. The high-resolution structure of chitosanase was obtained at SLAC by irradiating … (JGI) and DE-AC05-76RL01830 (EMSL). The crystal structures were determined at the Stanford Synchrotron …
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Synthetic Biology Lab
… the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the production of large, … interested in:  characterizing novel enzymatic activities using phylogenomic driven approaches, and understanding the …
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Fungal & Algal Program
… program seeks to expand our understanding of algal biology using genomics and multi-omics by working with research labs … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of … sampling of fungi, laboratory analysis and genomics data exploration. …
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Natural Prodcast Episode 17: Cassandra Quave
… there are now international regulations that provide a structure for ensuring that the countries that are the … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … screen to look at the interaction between SARS-coV-2 spike protein and the ACE2 receptor, so we’re looking at viral …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … depth required). Methylation detection currently only works using subread data, PacBio is working on support to use CCS …
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CSP New Investigator Call
… FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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A User-Centered Approach to Accessing JGI Data
… as a baseline, we can allow a user to collect all of the ‘protein FASTA files’ more easily.” He also elaborated on the … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … use of our search API. They have expressed an interest in using this to find files based on file metadata criteria. …
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Structural Determinants Underlying Photoprotection in the Photoactive Orange Carotenoid Protein of Cyanobacteria
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Accelerating Metagenomics Discoveries with Deep Learning
… (JGI), presented on generating vector representations of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid …
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