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David Goodstein
… genomic systems as the JGI’s eukaryote research efforts expanded to include basal metazoans and plants. Working with a talented team of scientists and … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … Blow, and their team have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … related to the return-to-work plan in response to the pandemic.   FY 2019 Number of Unique Users There were 1,933 … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… on the natural product dioxin ubiquinone, which actually comes from a marine bacterium. And so, I was working on … that are best understood right now. So yeah. If you can expand that repertoire, then yeah, you're helping things a lot … based on what component they might be interested in like genomics, metabolomics, just basic chemistry, natural …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, … of our Community Science Program, characterize organisms (plants and microbes) relevant to the DOE science mission …
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User Support
The JGI Project Management Office carries out a number of activities to … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute … The SAC serves as the Institute's key external advisory panel and advocate of the Institute's strategy, operations, … technology (IT) activities and strategic plan. … The Plant Program Advisory Committee is chartered to offer …
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A Plant Root Atlas for Tracking Developmental Trajectories
… the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be available for … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …
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FICUS-NERSC/KBASE
… community as a user facility pioneering functional genomics to solve the most relevant bioenergy and … function.   To jointly support these missions, and to expand upon highly successful past collaborations, the DOE … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Natural Prodcast Episode 22: Alison Narayan
Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … in my group quite frequently. OK, so imagine this sentence comes across your desk. We’re developing this enzyme into a … help of JGI’s DNA synthesis grant. And that having a whole panel of these enzymes allows us to ask the questions which …
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JGI@25: Using Team Science to Build Communities Around Data
… have been nominated for the project by more than 100 participants. Roughly 700 have been sequenced and annotated, … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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