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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … updateable transcriptome resource spanning diverse plant species. It was developed to improve plant genome … within the plant science community is of utmost importance. The scope of handling 18 different species is …
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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate
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Contrasting Modes of Mitochondrial Genome Evolution in Sister Taxa of Wood-Eating Marine Bivalves (Teredinidae and Xylophagaidae)
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … microscopic water mold, genetically related to such aquatic species as diatoms and kelp. Dubbed Phytopthora ramorum … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … at MIT, and I studied microbial ecology. I studied Vibrio species in the ocean, so heterotrophic bacteria. Now, we … that world, I did feel like there are there is a big importance on the kind of molecules that they’re sharing and …
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Environmental Genomics Group
… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 16: Marcy Balunas
… know that that’s ever necessarily like a good description of anyone because chemistry means a lot, especially when … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … able to produce chemistry that deals with reactive oxygen species and so potentially could go down that route.  DAN: …
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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
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Illuminating the Virosphere Through Global Metagenomics
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … we’re thinking they’re obligate marine. There’s so far no species or no strains known that really grow in freshwater. … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Picking Up Threads of Cotton Genomics
… growing on plants, with fluffy white bolls bursting out of the green pods in every direction. There are 100 million … ) and wild ( G. mustelinum, G. tomentosum, G. darwinii ) species. (Z. Jeffrey Chen, John T. Lovell and Avinash … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … aflatoxin being a secondary metabolite from an Aspergillus species that is pretty toxic – can cause liver cancer and …
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