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Emiley Eloe-Fadrosh
… ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … cells. This demonstration of the virus-host arms race in uncultivated yet abundant subsurface organisms was  recently …
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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … set of over 300 genomes spanning the fungal kingdom's full taxonomic breadth. Across this set, the same 15 core genes — …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … view of virus diversity,” though not at the higher-level classifications of virus groups (phyla.) The new sequences …
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Maureen Berg
… Maureen is currently developing new high-resolution and high-throughput methods to link uncultivated viruses to their host. With these new methods, she hopes to expand our understanding of the roles that viruses play in their ecosystems, …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … from The Ohio State University and the University of Michigan studying how virus infections cause significant …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users … from the public sector: academic and government institutions — with capabilities that had remained largely unknown … joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … in support of the DOE’s research mission.     Director's Perspective     Honors & Awards …
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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
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Towards a genome-based virus taxonomy
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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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