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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … but we can already provide raw mapping files as well as gene- and contig-level coverage. Other related products Q:  …
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Tracking the Origins of Methane-Producing Microbes
… Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … “This provided us with genetic evidence to tie together the evolutionary history of the different types of … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … turned out to be a mixture of genetic material with various origins, ranging from fungi, plants to bacteria. Back in …
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The birth of new exons: Mechanisms and evolutionary consequences
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … moved from the mitochondria into the nuclear genome over evolutionary time. They also discovered more than 6,000 … (grouping sequencing reads by their likely organism of origin) followed by phylogenomic analysis to confirm genuine …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and … that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk … molecular networking is– there’s two reasons. One, when we originally looked at chemical profiles generated using these … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental challenges.  Commissioned for the JGI’s 25th …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … of its genetic complexities will illuminate the evolutionary history of a pivotal plant as well as the …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate … PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working … launching the user’s project. See below for details on each step. …
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Patterns of genomic variation reveal a single evolutionary origin of the wild allotetraploid Mimulus sookensis
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the … of the genome , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our … their broad distribution indicate multiple, independent origin events? Do the cytotypes react differently in …
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