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Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
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CSP Functional Genomics
… Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … Biodesign and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … technology in order to enhance the quality of single-cell genomes and directly link functional information with …
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User Facilities into … provides customized analysis, the JGI also participates in publication of results. … as needed), and the work plan is written into a Statement of Work document. …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  … provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate …
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Open Frameworks Training the Next Generation of Scientists
… technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team of … involving academic faculty and researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User … for sequencing and analysis at the JGI to help produce novel fungal genomes. They manually curate data to connect …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … and manufacturing. Genomic science lies at the heart of biology, providing the foundational knowledge to … information into actionable insights and solutions. Genome-enabled biology provides solutions to strengthen …
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Cracking the Secrets of the Diatom’s Shell
… Diatoms, a group of tiny algae, are also known as “living opals” because of the strange, beautiful properties of their silica shells. But what genes are responsible for …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes … 33 reference genomes to build this pangenome, including a reassembly of the BTx623 reference genome. This cultivar has … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, … analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … to soil carbon storage during simulated range shifts of plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated … Characterization of simplified soil communities with high and low carbon use …
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