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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to … and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the Group Lead …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video … likely to work well for metabolomics.  Q:  What tool or method is being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A Method for …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating … for omics-based and analytical characterization, imaging, and visualization, through a collaborative, …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … looking at samples and revising all the media and revising methods. We didn’t spend a lot of time on this because …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast … approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the … expression, when used in addition to traditional methods, can offer scientists a more colorful palette of …
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication
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Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
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Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes
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CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome … works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement … plant species. It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint …
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