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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types …
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Industry Engagement Program
… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … including User Facilities like the JGI, through its Genesis Mission. Launched in 2025, the initiative aims to … National Laboratories, and User Facilities — as well as their resources. It will identify high-value partnerships …
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Mapping the Earth’s Hidden Fungal Kingdom
… Leveraging massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over … 30 times older than the entire human lineage. Yet despite their ubiquity and ancient origins, fungi remain largely … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … natural products field is based on, you know, in bacterial investigations. You’ve spent your whole career as far as I’m … bacteria, of course, are much smaller. But I think a lot of groups are sequencing fungi. Just going and sequencing them. …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … for technical help, feedback or a guided walk-through of the new Data Portal.  …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …
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Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … microbes cannot be cultivated under laboratory conditions, their genomes can’t be sequenced using traditional … Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel compared over 500,000 …
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic … as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … mining and sequence design with scaling the production of large, difficult to synthesize constructs such as those …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and actually get to the DNA sequence – sequences for the genes that code for the proteins that produce secondary … When we grow things in the lab, we’re not growing them in their natural environment, we’re not subjecting them to the …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … of these varied biomes; the forests share only about 20% of their fungal species. To make useful comparisons, the … these trophic guilds, this team focused on three main groups of fungi that appeared in all forests they sampled. …
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