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Finding the Fermenters
… data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science … from the literature. They then used the JGI’s GOLD and IMG data portals to get information about the genomes and … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Natural Prodcast Episode 22: Alison Narayan
… … DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately … are genetic entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of … The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… biofuels ), enhance plant health, cause diseases, and produce antibiotics. Still, the team estimates that genomic … on the JGI’s Integrated Microbial Genomes & Microbiomes ( IMG/M ) portal. As part of a comparative analysis, 824 new … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Data Ecosystem
To expand access to integrated data, improve tools and … cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the …
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of … their genomes can’t be sequenced using traditional approaches. Identifying and characterizing the planet’s … on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was a nice …
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IMG ER: a system for microbial genome annotation expert review and curation
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising … Genome Institute this summer through the Biotech Partners program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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FICUS-NERSC/KBASE
Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of the National Energy Research … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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Virginia (Ginny) Rich
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