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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … for genome annotation, comparative analysis and data distribution for the JGI's direct collaborators and the … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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The Cassava Genome: Current Progress, Future Directions
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Natural Prodcast Episode 4: Nancy Keller
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … After I got my undergraduate degree, which was in general biology, I joined the Peace Corps. And when I was … have on cluster sets that are sort of the same. You know, family clusters, like if you looked at the statins, you …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, … program under Award No DE-FC02-02ER63421. The meiosis gene identification was performed in the context of work …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as … PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated …
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year … into energy or biofuels. Although a member of the grass family, as its name suggests giant miscanthus literally …
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Current status and impending progress for cassava structural genomics
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Early evolution of the LIM homeobox gene family
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Natural Prodcast Episode 22: Alison Narayan
Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … in a route towards many different compounds in the same family. And so that you want it to have some promiscuity in … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: …
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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
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