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User Support
… the JGI will move to a new login service, requiring the use of an ORCID account with two-factor authentication enabled … a Login Walkthrough and FAQ . –– The JGI Project Management Office carries out a number of activities to facilitate … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Programs & Platform Leads
… genome science capabilities to support BER's mission of achieving a predictive understanding of complex … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, … Science Programs and draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI …
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An Integrated Dataset to Understand Ecosystem Interaction
… Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel … approach allows researchers to conduct a wide variety of analyses that contribute to a sustainable bioeconomy. … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … to their lab in Mulford Hall. There, they conducted DNA analyses of samples collected on recent SOD Blitz …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the mid-late ’80s. And at that time, you know, it’s before genomics existed. This is before we’re even thinking of … was fun having, you know, working with a student who was a geneticist, having them think like a chemist and thinking …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC Protocol JGI’s Total RNA Sample QC …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants The … plant lineages makes it ideal for comparative genomics studies, offering insight into genes critical for … Additionally, they want to expand their research into analyses of early-diverging land plants to further …
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JGI@25: Using Team Science to Build Communities Around Data
… for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … 1 billion years of evolution in Kingdom Fungi — from phylogenetic relationships to evolution of genomic mechanisms — … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Frequently Asked Questions: Project Management
… You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about … proposal calls and proposal submission, as well as examples of approved proposals, please visit the Proposals FAQ .  …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … of algae? You now have one place where you can browse the genetic blueprints of these photosynthetic organisms. … greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users …
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Genome Insider
… — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to …
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User Support Analysis Group
… focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product … ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group also performs ‘proof-of …
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