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Natural Prodcast Episode 22: Alison Narayan
… enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have an awful lot of crossover, where us … so starting from some of the enzymes that we had the most data on and knew the most about, working with my … Sure. ALISON NARAYAN: And so we usually start on small scale in the lab. So we’ll run things in like little …
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Secondary Metabolites Program
… cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, and refining … to explore the synthesis and function of these biologically significant compounds. By expanding the repertoire of … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our work at the …
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The JGI Data Portal: Improving User Experience
… agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to …
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Project Management Office
The JGI Project Management Office carries out a number of activities to … help with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching the user’s … of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … before you see toxin. And we have some preliminary data with other samples that we do see days to a week of a … use our science to connect to problems that are on global scales. So I think that’s one area of science that we’re …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … proteins interact with each other. There’s a lot of leading data from excellent groups about specific interaction … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …
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DOE Metrics
…     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …
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Homepage
…   Gain access to omics technologies generating community data at zero cost —  submit a proposal.  …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA library … these capabilities in other calls such as the  annual large-scale CSP call or through the  “Facilities Integrating … the full library.   … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Scaling Up Existing Skill Sets
I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing skill set to a new scale, which presented a host of interesting and ultimately … Year: 3rd year undergraduate student Mentor: Zhong Wang, Genome Analysis What effect has your summer internship with …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … to learn more, then I highly recommend David Hopwood’s book called  “Streptomyces in Nature and Medicine.” It’s … probably been since the last decade. We have a lot more data. Obviously, there’s been a lot of sequencing going on, …
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