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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome … led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 … or rice as homology models for computational function predictions and also due to the inability to link …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint … of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … see as the overall “theme” of your research? I know you’ve generally worked in various marine organisms. Except during …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, … So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with names — but not …
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Protocol for condition-dependent metabolite yield prediction using the TRIMER pipeline
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global … authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Genome Insider
… The Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews …
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Improved Assemblies Using a Source-Agnostic Pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of Contigs
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review … Review the list of open calls ; click on the call link to see specific details … Many of the submissions are done using web-based forms.   To view the proposal templates, go to the proposal …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy … The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … (polyploidy) and insights into the dynamics of gene expression as it grows back vigorously year after year …
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FICUS-NERSC/KBASE
… Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … The researcher then submits a proposal for consideration in the next …
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