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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a … genome science capabilities to support BER's mission of achieving a predictive understanding of complex … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint … that I wanted to include it. This is a conversation with Marc Chevrette. Marc is a postdoc in Jo Handelsman’s … Episode Transcript … This is Episode 6 of Natural Prodcast, our conversation with Marc Chevrette, a …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & sequencing … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … to convert food into energy. However, in environments with little or no oxygen, life had found other ways to … also used the tool to predict possible functions from 733 metagenome-assembled rumen genomes. Finally, they used the …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard … Please review our FAQ in advance of contacting the PMO office.  … start on any approved proposal – including the submission of samples for sequencing, or the submission of sequencing …
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Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis
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BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes
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An Automated Tool for Assessing Virus Data Quality
… being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science … to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared with permission from the PIs who drafted them.  …
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Natural Prodcast Episode 3: The Primer, Part 3
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … — DAN: So, you know, in the in the 50s 60s 70s, most of the exploration of this is done by what’s called “find and … drug discovery train moving, drug companies started working with some techniques referred to as “combinatorial …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … there a tool in this platform to search fungal genomes in metagenomes? A: Search in metagenomes is available from … While are still working on finalizing the tree and related publication the tree is still in development and not …
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