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Marine Microbe Contains Multitudes
… of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.  … Datasets … BBTools …
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Natural Prodcast Episode 9: Roger Linington
… of system-wide problems. And it’s not just constitutional analysis as a problem, we need corresponding improvements in … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire … to hear from you! We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … sequenced from curated DSMZ isolates, for which quality DNA has been provided by the team. These strains have been … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … 80s and the 90s. And so we started to be able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the …
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Natural Prodcast Episode 4: Nancy Keller
… to begin with. So transformation, or manipulation of the DNA of genes and bacteria, occurred much faster earlier than … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements …
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A sweet spot in marine ecosystems
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Dariia et al. (2023)  A standardized quantitative analysis strategy for stable isotope probing metagenomics … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together … industry, and government organizations for three days of scientific presentation, interactive panel discussions, …
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Natural Prodcast Episode 15: Katherine Duncan
… of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … to hear from you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic …
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