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Data Ecosystem
… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with … specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems … through distributed data infrastructure and linked data technologies. The NMDC seeks to connect and engage the …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Natural Prodcast Episode 22: Alison Narayan
… … DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the … Yeah. So– yeah, with our collaboration with JGI , we basically designed a library that includes hundreds of … element that needs to be taken into consideration in building these models. And so I think that one of the …
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Natural Prodcast Episode 4: Nancy Keller
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! … we’re going to be presenting some conversations we had with scientists in the field of natural products. So, it’s a … just put people off. I don’t know, you know, if you take a basic microbiology – so I do teach classes too – not how I …
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Plant Program
With collaborative user projects, the JGI’s Plant Program … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science … These resources would provide the research community with the ability to address questions such as sphagnum’s … a carbon sink or a carbon source. These research results, building on the availability of genomic information from two …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, … to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their potential …
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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find that on …
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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Complementary Microorganisms in Highly Corrosive Biofilms from an Offshore Oil Production Facility
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Natural Prodcast Episode 3: The Primer, Part 3
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and … me and Alison. In the previous episodes we talked about the basic science and the history of the field of natural … drug discovery train moving, drug companies started working with some techniques referred to as “combinatorial …
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